GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 
Glycogene class
A3GALT2
A4GALT
A4GNT
ABO
ALG1
ALG10
ALG10B
ALG11
ALG12
ALG13
ALG14
ALG1L
ALG1L2
ALG2
ALG3
ALG5
ALG6
ALG8
ALG9
B3GALNT1
B3GALNT2
B3GALT1
B3GALT2
B3GALT4
B3GALT5
B3GAT1
B3GAT2
B3GNT2
B3GNT3
B3GNT4
B3GNT5
B3GNT6
B3GNT7
B3GNT8
B4GALNT1
B4GALNT2
B4GALNT3
B4GALNT4
B4GALT1
B4GALT2
B4GALT3
B4GALT4
B4GALT5
B4GALT6
C1GALT1
C1GALT1C1
CHST1
CHST10
CHST2
CHST3
CHST4
CHST5
CHST8
CHST9
CMAS
CTBS
DAD1
DDOST
DPAGT1
DPM1
DPM2
DPM3
EDEM1
EDEM2
EDEM3
ENGASE
FPGT
FUCA1
FUT1
FUT10
FUT11
FUT2
FUT3
FUT4
FUT5
FUT6
FUT7
FUT8
FUT9
GAL3ST1
GAL3ST2
GAL3ST3
GAL3ST4
GALNT1
GALNT10
GALNT11
GALNT12
GALNT13
GALNT14
GALNT15
GALNT16
GALNT17
GALNT18
GALNT2
GALNT3
GALNT4
GALNT5
GALNT6
GALNT7
GALNT8
GALNT9
GALNTL6
GANAB
GBGT1
GCNT1
GCNT2
GCNT3
GCNT4
GNPNAT1
GNPTAB
GNPTG
HEXA
HEXB
MAN1A1
MAN1A2
MAN1B1
MAN1C1
MAN2A1
MAN2A2
MAN2B1
MAN2B2
MAN2C1
MANBA
MANEA
MGAT1
MGAT2
MGAT3
MGAT4A
MGAT4B
MGAT4C
MGAT4D
MGAT5
MOGS
NAGA
NAGK
NAGPA
NEU1
NEU2
NEU3
NEU4
PRKCSH
RPN1
RPN2
ST3GAL1
ST3GAL2
ST3GAL3
ST3GAL4
ST3GAL5
ST3GAL6
ST6GAL1
ST6GAL2
ST6GALNAC1
ST6GALNAC2
ST6GALNAC3
ST6GALNAC4
ST6GALNAC5
ST6GALNAC6
ST8SIA1
ST8SIA2
ST8SIA3
ST8SIA4
ST8SIA5
ST8SIA6
STT3A
STT3B
UGCG
UGGT1
UGGT2
UGT8
Pathway Map
FUT6



General Information
Gene Symbol:   
FUT6
Protein name:   
Alpha-(1,3)-fucosyltransferase 6
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
GT10
E.C. No:   
2.4.1.65
Organs:   
Reaction (SNFG):   
+
→
+ GDP
+
→
+ GDP
Reaction (IUBMB):   
No specified reaction.
About

• FUT6 utilizes solely type 2 LacNAc but not type 1 LacNAc, Sialylated oligosaccharides are good substrates as well as non-sialylated ones.
• Thus, FUT6 is able to synthesize LewisX and sialyl LewisX, but not sialyl Lewisa or Lewisa.
• The enzyme creates these epitopes on plasma proteins (plasma, milk, saliva) and also epithelial cells (liver, kidney, colon, small intestine, bladder, uterus, and salivary glands).
• It is not expressed in rodents.
• May be associated with the expression of LeX and sLeX antigen on plasma/liver-secreted proteins after inflammation mediated by IL-1β and IL-6.
• FUT6 is widely expressed in cancer cells, and may be partly responsible for the synthesis of sialyl LewisX in these cells (along with FUT3, FUT5).
• It may regulate cancer cell growth via the PI3K/Akt signaling pathway.

Related Pathway
KEGG ORTHOLOGY:   
K07634
KEGG Pathway:   
ko00601  ko01100 
Reactome:   
R-HSA-9037629
Related Database
Organism:   
Homo sapiens
Uniprot:   
P51993 
NCBI GeneID:   
2528
GlyMap GeneID:   
2528
DNA aRefSeq:   
NM_000150.2 
Protein RefSeq:   
NP_000141.1 
BRENDA:   
Kinetic info.
OMIM number:   
136836
GeneCards database:   
FUT6
Enzyme Specificity
Glycan Type:  
     N-linked, O-linked (mucin type), GSL
Compartment:  
     Cis, Medial, Trans, TGN
Substrate:  
     Gal(b1-4)GlcNAc(b1-?) or NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-?)
Product:  
     Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-?) or NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-?)
Constraints:  
     !GlcNAc(b1-6)[GlcNAc(b1-3)]Gal(b1-4)@GlcNAc(b1-?)
Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:    3.75e-06    (pmol/cell • hr)       KM:    1.40e+09    (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN










Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 30 20 10 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 4 2 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
Transcriptional start site (TSS) 0 200 -2000 -1800 -1600 -1400 -1200 -1000 -800 -600 -400 -200
ENST00000286955 ENST00000527106 ENST00000592563 SP1 GLIS1 ZNF264 MAZ TP73 ASCL1 MITF ELF4 ZBTB40 RUNX1 PPARG GATA2 ZFP3 EBF1 SPIB ZBTB7A FOXA3 TFAP4 FOXA2 JUND RCOR1 TFAP2C RCOR2
miRNA-GlycoEnzyme Interactome {ref. 9}
miRNA Name Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
hsa-miR-4634 817-824 -0.643 96.0 -0.643 97.0 noncon
hsa-miR-4638-5p 809-816 -0.472 96.0 -0.472 97.0 noncon
hsa-miR-4485-5p 637-644 -0.406 97.0 -0.406 98.0 noncon
hsa-miR-8064 1072-1079 -0.406 98.0 -0.354 98.0 noncon
hsa-miR-5008-5p 62-69 -0.387 97.0 -0.387 98.0 noncon
hsa-miR-6886-5p 269-276 -0.385 95.0 -0.385 96.0 noncon
hsa-miR-552-3p 604-611 -0.373 98.0 -0.373 98.0 noncon
hsa-miR-526b-5p 1033-1040 -0.373 98.0 -0.326 98.0 noncon
hsa-miR-6831-5p 70-77 -0.37 98.0 -0.37 98.0 noncon
hsa-miR-5008-5p 190-197 -0.365 97.0 -0.365 98.0 noncon
hsa-miR-675-5p 540-546 -0.362 91.0 -0.362 93.0 noncon
hsa-miR-4751 174-181 -0.36 96.0 -0.36 97.0 noncon
hsa-miR-3927-3p 70-77 -0.359 97.0 -0.359 98.0 noncon
hsa-miR-5088-5p 1126-1132 -0.349 97.0 -0.217 93.0 noncon
hsa-miR-6516-5p 562-569 -0.344 98.0 -0.344 99.0 noncon
hsa-miR-4435 672-679 -0.339 97.0 -0.339 98.0 noncon
hsa-miR-4530 199-206 -0.319 97.0 -0.319 98.0 noncon
hsa-miR-483-5p 690-696 -0.319 94.0 -0.319 96.0 noncon
hsa-miR-6742-3p 959-966 -0.315 98.0 -0.276 98.0 noncon
hsa-miR-4742-5p 87-94 -0.315 98.0 -0.315 99.0 noncon
hsa-miR-1976 768-775 -0.308 97.0 -0.308 98.0 noncon
hsa-miR-6791-3p 963-970 -0.307 97.0 -0.269 97.0 noncon
hsa-miR-6829-3p 963-970 -0.299 97.0 -0.262 97.0 noncon
hsa-miR-2467-5p 396-403 -0.299 97.0 -0.299 98.0 noncon
hsa-miR-4475 226-233 -0.298 97.0 -0.298 98.0 noncon
hsa-miR-671-5p 252-259 -0.292 95.0 -0.292 96.0 noncon
hsa-miR-5095 911-918 -0.292 96.0 -0.256 96.0 noncon
hsa-miR-6764-3p 785-792 -0.289 97.0 -0.289 98.0 noncon
hsa-miR-598-5p 536-542 -0.289 94.0 -0.289 95.0 noncon
hsa-miR-6824-3p 785-792 -0.281 97.0 -0.281 98.0 noncon
hsa-miR-4302 374-381 -0.28 97.0 -0.28 97.0 noncon
hsa-miR-4524a-3p 856-863 -0.279 96.0 -0.279 97.0 noncon
hsa-miR-4726-3p 233-240 -0.279 97.0 -0.279 98.0 noncon
hsa-miR-3937 510-516 -0.278 93.0 -0.278 95.0 noncon
hsa-miR-4691-3p 933-940 -0.277 96.0 -0.243 96.0 noncon
hsa-miR-6793-3p 332-339 -0.274 97.0 -0.274 98.0 noncon
hsa-miR-4524a-3p 1029-1036 -0.274 95.0 -0.241 96.0 noncon
hsa-miR-504-3p 1001-1008 -0.273 95.0 -0.24 96.0 noncon
hsa-miR-6747-3p 766-773 -0.272 95.0 -0.272 97.0 noncon
hsa-miR-5008-5p 45-52 -0.268 93.0 -0.268 95.0 noncon
hsa-miR-5095 737-744 -0.267 95.0 -0.267 96.0 noncon
hsa-miR-326 361-368 -0.261 95.0 -0.261 96.0 noncon
hsa-miR-7151-3p 911-918 -0.257 95.0 -0.226 95.0 noncon
hsa-miR-4454 641-647 -0.255 93.0 -0.255 95.0 noncon
hsa-miR-499b-3p 497-503 -0.251 96.0 -0.251 97.0 noncon
hsa-miR-499a-3p 497-503 -0.251 96.0 -0.251 97.0 noncon
hsa-miR-581 942-949 -0.251 94.0 -0.221 95.0 noncon