GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 

Glycogene class
ABO
ALG1
ALG10
ALG10B
ALG11
ALG12
ALG13
ALG14
ALG1L
ALG1L2
ALG2
ALG3
ALG5
ALG6
ALG8
ALG9
B3GALNT2
B3GALT2
B3GAT1
B3GAT2
B3GNT2
B3GNT4
B3GNT7
B3GNT8
B4GALNT2
B4GALNT3
B4GALNT4
B4GALT1
B4GALT2
B4GALT3
B4GALT4
B4GALT5
CHST1
CHST10
CHST2
CHST3
CHST4
CHST5
CHST8
CHST9
CMAS
CTBS
DAD1
DDOST
DPAGT1
DPM1
DPM2
DPM3
EDEM1
EDEM2
EDEM3
ENGASE
FPGT
FUCA1
FUT1
FUT10
FUT11
FUT2
FUT3
FUT4
FUT5
FUT6
FUT7
FUT8
FUT9
GAL3ST2
GAL3ST3
GANAB
GCNT2
GNPNAT1
GNPTAB
GNPTG
MAN1A1
MAN1A2
MAN1B1
MAN1C1
MAN2A1
MAN2A2
MAN2B1
MAN2B2
MAN2C1
MANBA
MANEA
MGAT1
MGAT2
MGAT3
MGAT4A
MGAT4B
MGAT4C
MGAT4D
MGAT5
MOGS
NAGK
NAGPA
NEU1
NEU2
NEU3
NEU4
PRKCSH
RPN1
RPN2
ST3GAL3
ST3GAL4
ST3GAL6
ST6GAL1
ST6GAL2
ST8SIA2
ST8SIA3
ST8SIA4
STT3A
STT3B
UGGT1
UGGT2
Pathway Map

MAN2A2



General Information
Gene Symbol:   
MAN2A2
Protein name:   
Alpha-mannosidase 2x
Enzyme Class:   
Glycosidase
CAZy Family:   
E.C. No:   
Organs:   
Reaction (SNFG):   
MAN2A2 MAN2A2
H2O +
+
H2O +
+
Reaction (IUBMB):   
No specified reaction.

About

• Golgi resident mannosidase that cleaves the final two α1,3-Man and α1,6-Man during N-glycan processing.
• Man2α2 and Man2a1 act as isozymes, with similar α1,3/6-Man specificity.
• Absence of both is necessary for depeletion of complex N-glycans in mice, suggesting functional redundancy.
• Mice lacking MAN2A1 exhibit many of the features of humans lacking this enzyme activity including significant dyserythropoiesis, anemia, splenomegaly, and immature erythrocytes or reticulocytes in the peripheral blood, but no neurologic or behavioral symptoms, no reproductive problems, and no major histological findings in most tissues.
• Man2α2-deficient male mice are largely inferile, but females are normal.
• Swainsonine is a α-Mannosidase inhibitor.


Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA aRefSeq:   
Protein RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     N-linked
Compartment:  
     Cis, Medial, Trans, TGN
Substrate:  
     Man(a1-6)...Man(a1-6) or Man(a1-3)...Man(a1-6)
Product:  
     ...Man(a1-6) or ...Man(a1-6)
Constraints:  
     !Gal(b1-?)&nGlcNAc(b1-2)Man(a1-3)>=1&nGlcNAc(b1-?)=3

Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:    3.00e-04    (pmol/cell • hr)       KM:    2.00e+08    (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 40 30 20 10 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 100 80 60 40 20 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data

miRNA-GlycoEnzyme Interactome {ref. 9}
miRNA Name Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
hsa-miR-6878-3p 1892-1899 -0.437 98.0 -0.035 67.0 noncon
hsa-miR-1909-3p 1321-1328 -0.436 98.0 -0.436 98.0 noncon
hsa-miR-3618 1375-1382 -0.415 97.0 -0.415 98.0 noncon
hsa-miR-6722-3p 1321-1328 -0.399 98.0 -0.399 98.0 noncon
hsa-miR-6828-3p 2764-2771 -0.395 98.0 -0.032 68.0 noncon
hsa-miR-2682-5p 1388-1395 -0.391 99.0 -0.391 99.0 noncon
hsa-miR-449c-5p 1388-1395 -0.386 99.0 -0.386 99.0 noncon
hsa-miR-6891-3p 1337-1344 -0.383 97.0 -0.383 98.0 noncon
hsa-miR-6072 1337-1344 -0.378 98.0 -0.378 98.0 noncon
hsa-miR-34b-5p 1388-1395 -0.37 99.0 -0.37 99.0 noncon
hsa-miR-6887-3p 2735-2742 -0.367 95.0 -0.03 54.0 noncon
hsa-miR-4286 1782-1789 -0.357 98.0 -0.029 61.0 noncon
hsa-miR-1911-3p 2620-2627 -0.353 97.0 -0.029 59.0 noncon
hsa-miR-1184 630-637 -0.33 98.0 -0.33 98.0 noncon
hsa-let-7d-5p 2154-2161 -0.325 90.0 -0.027 42.0 noncon
hsa-miR-4458 2154-2161 -0.325 90.0 -0.027 42.0 noncon
hsa-miR-4500 2154-2161 -0.323 91.0 -0.027 45.0 noncon
hsa-let-7f-5p 2154-2161 -0.315 90.0 -0.026 44.0 noncon
hsa-miR-6826-3p 2736-2743 -0.309 94.0 -0.026 59.0 noncon
hsa-miR-4460 2137-2144 -0.308 93.0 -0.026 45.0 noncon
hsa-miR-371a-3p 1309-1316 -0.306 97.0 -0.306 98.0 noncon
hsa-miR-617 2789-2795 -0.304 95.0 -0.009 40.0 noncon
hsa-miR-6883-3p 1077-1084 -0.3 96.0 -0.3 97.0 noncon
hsa-miR-767-3p 2763-2770 -0.298 97.0 -0.025 53.0 noncon
hsa-miR-6778-3p 360-366 -0.288 96.0 -0.288 97.0 noncon
hsa-miR-6810-5p 816-823 -0.287 96.0 -0.287 97.0 noncon
hsa-miR-631 2515-2522 -0.283 93.0 -0.024 45.0 noncon
hsa-miR-4326 1340-1347 -0.282 95.0 -0.282 96.0 noncon
hsa-miR-501-5p 2773-2780 -0.272 96.0 -0.023 60.0 noncon
hsa-miR-548au-3p 1387-1393 -0.267 94.0 -0.267 95.0 noncon
hsa-miR-6752-3p 841-848 -0.266 92.0 -0.266 94.0 noncon
hsa-miR-18a-3p 195-202 -0.262 96.0 -0.262 97.0 noncon
hsa-miR-6865-5p 2479-2486 -0.252 93.0 -0.021 58.0 noncon
hsa-miR-6815-5p 2479-2486 -0.252 93.0 -0.021 58.0 noncon