GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 

Glycogene class
A3GALT2
A4GALT
A4GNT
ABO
B3GALNT1
B3GALNT2
B3GALT1
B3GALT2
B3GALT4
B3GALT5
B3GAT1
B3GAT2
B3GLCT
B3GNT2
B3GNT3
B3GNT4
B3GNT5
B3GNT6
B3GNT7
B4GALNT1
B4GALNT2
B4GALNT3
B4GALNT4
B4GALT1
B4GALT2
B4GALT3
B4GALT4
B4GALT5
B4GALT6
C1GALT1
C1GALT1C1
CHST1
CHST10
CHST2
CHST3
CHST4
CHST5
CHST8
CHST9
CMAS
EOGT
FKRP
FKTN
FPGT
FUCA1
FUT1
FUT2
FUT3
FUT4
FUT5
FUT6
FUT7
FUT9
GAL3ST1
GAL3ST2
GAL3ST3
GAL3ST4
GALNT1
GALNT10
GALNT11
GALNT12
GALNT13
GALNT14
GALNT15
GALNT16
GALNT17
GALNT18
GALNT2
GALNT3
GALNT4
GALNT5
GALNT6
GALNT7
GALNT8
GALNT9
GALNTL6
GBGT1
GCNT1
GCNT2
GCNT3
GCNT4
GXYLT1
GXYLT2
HEXA
HEXB
LFNG
MFNG
MGAT5B
NAGA
NEU1
NEU2
NEU3
NEU4
OGT
POFUT1
POFUT2
POGLUT1
POGLUT2
POGLUT3
POMGNT1
POMGNT2
POMT1
POMT2
RFNG
RXYLT1
ST3GAL1
ST3GAL2
ST3GAL3
ST3GAL4
ST3GAL5
ST3GAL6
ST6GAL1
ST6GAL2
ST6GALNAC1
ST6GALNAC2
ST6GALNAC3
ST6GALNAC4
ST6GALNAC5
ST6GALNAC6
ST8SIA1
ST8SIA2
ST8SIA3
ST8SIA4
ST8SIA5
ST8SIA6
TMTC1
TMTC2
TMTC3
TMTC4
UGCG
UGT8
XXYLT1
Pathway Map

ST3GAL2



General Information
Gene Symbol:   
ST3GAL2
Protein name:   
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
E.C. No:   
Organs:   
Reaction (SNFG):   
+
+ CMP
+
+ CMP
Reaction (IUBMB):   
No specified reaction.

About

• ST3Gal-II exclusively uses Type III lactosamine (Galβ1,3GalNAc) substrate. Poor activity for Type I and no activity for Type-II.
• In contrast, ST3Gal-III, ST3Gal-IV, ST3Gal-V, and ST3Gal-VI use Galβ1-3/4Glc(NAc)-R substrate
• Mainly involved in the synthesis of GD1a, GM1b and GT1b in glycolipids. Mice lacking ST3Gal-II have 50% less GD1a, GT1b.
• Mice lacking ST3Gal-II/III display complete lack of these gangliosides suggesting that these are the two dominant enzymes involved in GD1a, GT1b production.
• Can act on glycoproteins e.g. fetuin and oligosaccharide substrate, though predominant role is during glycolipid biosynthesis.
• Transgenic mice show onset of cardiac dilation and enhanced cardiomyopathy.
• Mouse and the human ST3Gal-I & -II and ST6GalNAc-I & -II contain 4 residues named Kurosawa motif (Cys-Xaa70-85-Cys-Xaα2-Cys-Ala-Val-Val-Gly-Asn-Xaa120-170-Cys; Xaa denotes any amino acid residue). These enzymes commonly utilize the Galβ1,3GalNAc structure as an acceptor substrate.
• Human ST3Gal-II mRNA is tissue specific, being prominent in skeletal muscle and heart and also expressed in liver, placenta, brain, and pancreas, while that in lung and kidney is very low. Mouse ST3Gal-II is expressed in brain, liver, and striated muscle.


Related Pathway
KEGG ORTHOLOGY:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA aRefSeq:   
Protein RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     O-linked (mucin type), O-linked (other), GSL
Compartment:  
     
Substrate:  
     Gal(b1-3)GalNAc(b1-?) or Gal(b1-3)GlcNAc(b1-?)
Product:  
     NeuAc(a2-3)Gal(b1-3)GalNAc(b1-?) or NeuAc(a2-3)Gal(b1-3)GlcNAc(b1-?)

Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:    7.26e-05    (pmol/cell • hr)       KM:    2.60e+08    (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 8 6 4 2 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 50 40 30 20 10 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
Transcriptional start site (TSS) 0 200 -2000 -1800 -1600 -1400 -1200 -1000 -800 -600 -400 -200
ENST00000393640 PPARG TCF12 TCF4 PPARG ZBTB17 USF2 ERG JUN AR EGR3 NR5A2


miRNA-GlycoEnzyme Interactome {ref. 9}
ST3GAL2/hsa-miR-6801-3p
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'...GAACAGGGACCG GCAGGGGA ...
3'   CCGGUCACUCAC CGUCCCC A
8mer 1415-1422 -0.263 92.0 -0.196 90.0 noncon