Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Glycogene class |
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Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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GlcN(6P) | → | GlcNAc(6P) |
• Converts glucosamine 6 phosphate to N-acetylglucosamine 6 phosphate in the hexosamine biosynthesis pathway.
ER | Cis- | Medial- | Trans- | TGN |
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GNPNAT1/hsa-miR-3929 |
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miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'... UGAAUUAGCAAACC
UCAGCCUA
...
3' UCACCAGAUGAGUGU AGUCGGA G |
8mer | 760-767 | -0.255 | 99.0 | -0.209 | 99.0 | noncon | |
5'... AUGAUCCUUCCACC
UCAGCCU
C...
3' UCACCAGAUGAGUGU AGUCGGA G |
7mer-m8 | 2237-2243 | -0.02 | 54.0 | -0.011 | 67.0 | noncon | |
5'... GUGAUCCUCCCACC
UCAGCCU
C...
3' UCACCAGAUGAGUGU AGUCGGA G |
7mer-m8 | 2366-2372 | -0.02 | 54.0 | -0.011 | 67.0 | noncon | |
5'... CCAUCCCUCCUGCC
UCAGCCU
C...
3' UCACCAGAUGAGUGU AGUCGGA G |
7mer-m8 | 2527-2533 | -0.02 | 54.0 | -0.011 | 67.0 | noncon | |
5'... AGUGAUCCUCUGCC
UCAGCCU
C...
3' UCACCAGAUGAGUGU AGUCGGA G |
7mer-m8 | 2651-2657 | -0.02 | 54.0 | -0.011 | 67.0 | noncon |