GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 

Pathway Map

POFUT2



General Information
Gene Symbol:   
POFUT2
Protein name:   
GDP-fucose protein O-fucosyltransferase 2
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
E.C. No:   
Organs:   
Reaction (SNFG):   
+ Ser|Thr
+ GDP
Reaction (IUBMB):   
No specified reaction.

About

• ER resident protein-O-fucosyltransferases [POFUT1/FUT12 and POFUT2/FUT13] that attach alpha-Fuc to hydroxyl of Ser/Thr at specific consensus sequences of epidermal growth factor (EGF)-like repeats (added by POFUT1) and thrombospondin type 1 repeat (TSR, added by POFUT2).
• Putative consensus sequences for O-fucosylation in EGF repeats [C2-X-X-X-X-(S/T)-C3] and TSRs [C2-X-X-(S/T)-C3-X-X-G] have been defined, where Cx refers to the position of one of the conserved cysteines within the domain and S/T is the site of modification.
• Thus, these enzymes may fucosylate ~100 EGF repeat structures (by POFUT1) and ~30 TSRs (by POFUT2). EGF repeats of proteins bearing O-Fuc include tissue-type plasminogen activator, Factor VII, Factor IX, Notch, Delta, Serrate, Jagged, and Cripto. Examples of TSR1 modified proteins include members of the disintegrin and metalloprotease domain with thrombospondin type 1 repeats family (e.g., ADAMTS 5 and 13) and ADAMTS-like family (e.g., ADAMTSL1; Wang et al. 2007).
• Mice lacking POFUT1 are embryonically lethal, and those without POFUT2 die at E7.5. Thus, both POFUT1 and POFUT2 play essential roles in development.
• POFUT1 plays a key role in regulating Notch dependent signaling.
• The O-fucose on Notch EGF repeats are extended by the Fringe family of β3-GlcNAcTs. They can be further extended to create Siaα2-3/6Galβ1-4GlcNAcβ1-3Fucα-O-Ser/Thr.
• O-Fucose on TSRs is typically found extended to the disaccharide Glcβ1-3Fucα-O-Ser/Thr This extension elongation is due to a β3-glucosyltransferase. Mutations in the β3-glucosyltransferase result in the human developmental disorder Peters plus syndrome. Both O-fucosylated and C-mannosylation occur on TSR1/thrombospondin-1.


Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA aRefSeq:   
Protein RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     O-linked (other)
Compartment:  
     ER
Substrate:  
     Ser|Thr
Product:  
     Fuc(a1-?)Ser|Thr

Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:       (pmol/cell • hr)       KM:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 10 8 6 4 2 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 200 180 160 140 120 100 80 60 40 20 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
Transcriptional start site (TSS) 0 200 -2000 -1800 -1600 -1400 -1200 -1000 -800 -600 -400 -200
ENST00000331343 ENST00000334538 ENST00000349485 ENST00000615172 IKZF1 USF1 MAX ARID1B TCF12 E2F6 NR2C2 STAT5A WT1 GATA2 BHLHE40 ZNF263 MYC ZNF264 NFE2 SP1 EGR3 EGR2 MYCN MYCN KMT2A NFE2 YY1


miRNA-GlycoEnzyme Interactome {ref. 9}
POFUT2/hsa-miR-3131
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'... AAGGGGCCCUGUAA GUCCUCG U...
3'   UUCCGGGAAGGUGGU CAGGAGC U
7mer-m8 1778-1784 -0.343 92.0 -0.002 12.0 noncon
5'... UAGAGCUGGGCUCC GUCCUCG G...
3'   UUCCGGGAAGGUGGU CAGGAGC U
7mer-m8 166-172 -0.161 72.0 -0.161 81.0 noncon