GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 

Pathway Map

ST8SIA1



General Information
Gene Symbol:   
ST8SIA1
Protein name:   
Alpha-N-acetylneuraminide alpha-2,8-sialyltransferase
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
E.C. No:   
Organs:   
Reaction (SNFG):   
+
+ CMP
+
+ CMP
Reaction (IUBMB):   
No specified reaction.

About

• Key enzyme for the biosynthesis of b-series gangliosides on glycolipids, thus called GD3 synthase. ST8Sia-I uses GM3 (Neu5Acα2-3Galβ1-4Glcβ1-O-Cer) to form GD3 (Neu5Acα2-8Neu5Acα2-3Galβ1-4Glcβ1-O-Cer) (b-series). This can then form GT3 (c-series gangliosides). ST8Sia I and b- and c-series gangliosides are implicated in oncogenesis by mediating cell proliferation, migration, tumor growth, and angiogenesis. GD3 is weakly expressed in most normal cells but upregulated in cancer.
• Expressed in various organs, particularly the brain, and overexpressed in neuroectoderm-derived malignant cells such as melanoma, glioblastoma, neuroblastoma, and estrogen receptor-negative breast cancer.
• ST8SIA1 knockout mice completely lack b- and c-series gangliosides. However, they show almost complete nervous tissue morphology and no apparent abnormal behavior. But they show reduced reneration of nerve, suggesting a role for the enzyme in repair rather than normal differentiation.
• ST8SIA1 displayed higher expression among ER-negative breast cancer tumors and this is assocaiated with poor pathohistological grading.


Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA aRefSeq:   
Protein RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     GSL
Compartment:  
     
Substrate:  
     NeuAc(a2-3)Gal(b1-?) or NeuAc(a2-8)NeuAc(a2-3)Gal(b1-?)
Product:  
     NeuAc(a2-8)NeuAc(a2-3)Gal(b1-?) or NeuAc(a2-8)NeuAc(a2-8)NeuAc(a2-3)Gal(b1-?)

Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:       (pmol/cell • hr)       KM:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 4 2 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 100 80 60 40 20 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data

miRNA-GlycoEnzyme Interactome {ref. 9}
ST8SIA1/hsa-miR-4770
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'...UCCAAGUAUU ACCAUAA A...
3'   UCGAUGUCACA GUAGAG U
7mer-A1 962-968 -0.305 98.0 -0.304 98.0 noncon