Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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UDP-GlcA [cyto] or UDP-GalNAc [cyto] or UDP-GlcA [cyto] or UDP-GalNAc [cyto] | → | UDP-GlcA [ER] or UDP-GalNAc [ER] or UDP-GlcA [Golgi] or UDP-GalNAc [Golgi] |
• UDP-GalNAc & UDP-GlcA transporter
ER | Cis- | Medial- | Trans- | TGN |
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SLC35D1/hsa-miR-107 |
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miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'... UAGUGUGAAUCCAA
AUGCUGCA
...
3' ACUAUCGGGACAUGU UACGACG A |
8mer | 955-962 | -0.282 | 96.0 | -0.061 | 72.0 | noncon | |
5'... UUCUCUCAAAACCA
AUGCUGCA
...
3' ACUAUCGGGACAUGU UACGACG A |
8mer | 1335-1342 | -0.236 | 93.0 | -0.052 | 68.0 | noncon | |
5'... CUUUUUAUUGAACU
AUGCUGC
C...
3' ACUAUCGGGACAUGU UACGACG A |
7mer-m8 | 1919-1925 | -0.174 | 88.0 | -0.039 | 61.0 | noncon | |
5'... AUCAUUCAAAUUGU
UGCUGCA
U...
3' ACUAUCGGGACAUGUU ACGACG A |
7mer-A1 | 381-387 | -0.164 | 87.0 | -0.151 | 89.0 | noncon | |
5'... GUCUUACUUUCAGG
AUGCUGC
U...
3' ACUAUCGGGACAUGU UACGACG A |
7mer-m8 | 4597-4603 | -0.075 | 68.0 | -0.012 | 40.0 | noncon | |
5'... AAGCACUUGACCCC
AUGCUGC
C...
3' ACUAUCGGGACAUGU UACGACG A |
7mer-m8 | 4497-4503 | -0.029 | 38.0 | -0.005 | 31.0 | noncon |