Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Pathway figs |
---|
Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
---|
Glc(6P) | → | Fruc(6P) |
• Glucose-6-phosphate isomerase converts glucose-6-phosphate into fructose-6-phosphate.
• Second step in glycolysis pathway.
ER | Cis- | Medial- | Trans- | TGN |
---|---|---|---|---|
|
|
|
|
|
GPI/hsa-miR-1273h-5p |
---|
miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...CCUCUUGCCUCAG
CCUCCCAA
...
3' UGACGUCGGAACU GGAGGGU C |
8mer | 1112-1119 | -0.259 | 91.0 | 0.0 | 22.0 | noncon | |
5'...CCGCCCGCCUCAG
CCUCCCAA
...
3' UGACGUCGGAACU GGAGGGU C |
8mer | 1439-1446 | -0.223 | 88.0 | 0.0 | 22.0 | noncon | |
5'...CCGCCUGCUUUGG
CCUCCCAA
...
3' UGACGUCGGAACU GGAGGGU C |
8mer | 2027-2034 | -0.223 | 88.0 | 0.0 | 22.0 | noncon | |
5'...UCUCCCACCUCAG
CCUCCCA
C...
3' UGACGUCGGAACU GGAGGGU C |
7mer-m8 | 1557-1563 | -0.134 | 71.0 | 0.0 | 22.0 | noncon | |
5'...CUGCCCGCCUCAG
CCUCCCA
C...
3' UGACGUCGGAACU GGAGGGU C |
7mer-m8 | 944-950 | -0.089 | 59.0 | 0.0 | 22.0 | noncon | |
5'...AUUGCAAGCUCCG
CCUCCCA
G...
3' UGACGUCGGAACU GGAGGGU C |
7mer-m8 | 1269-1275 | -0.061 | 52.0 | 0.0 | 0.0 | noncon |