Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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Glc(6P) | → | Fruc(6P) |
• Glucose-6-phosphate isomerase converts glucose-6-phosphate into fructose-6-phosphate.
• Second step in glycolysis pathway.
ER | Cis- | Medial- | Trans- | TGN |
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GPI/hsa-miR-485-5p |
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miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...CUCGUGCUCAUCUG
CAGCCUC
C...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 16-22 | -0.277 | 95.0 | -0.245 | 95.0 | noncon | |
5'...GGAGGUUGUAGGCU
CAGCCUC
U...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 304-310 | -0.222 | 92.0 | -0.004 | 32.0 | noncon | |
5'...AGGAGCAUUCACUU
CAGCCUC
U...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 2207-2213 | -0.222 | 92.0 | 0.0 | 0.0 | noncon | |
5'...UCAUAGCUGACUGA
AGCCUCA
A...
3' CUUAAGUAGUGCCGG UCGGAG A |
7mer-A1 | 1682-1688 | -0.165 | 83.0 | 0.0 | 14.0 | noncon | |
5'...AGGGCACUUGCUUG
AGCCUCA
U...
3' CUUAAGUAGUGCCGG UCGGAG A |
7mer-A1 | 2317-2323 | -0.119 | 71.0 | 0.0 | 0.0 | noncon | |
5'...GAGAUCUCCCACCU
CAGCCUC
C...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 1554-1560 | -0.118 | 71.0 | 0.0 | 14.0 | noncon | |
5'...UAAUCCUCUUGCCU
CAGCCUC
C...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 1109-1115 | -0.115 | 70.0 | 0.0 | 14.0 | noncon | |
5'...CCAUUCUCCUGCCU
CAGCCUC
C...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 1890-1896 | -0.088 | 60.0 | 0.0 | 14.0 | noncon | |
5'...CUAUUCUCCUGCCU
CAGCCUC
C...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 805-811 | -0.081 | 58.0 | 0.0 | 0.0 | noncon | |
5'...UGAUCCGCCCGCCU
CAGCCUC
C...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 1436-1442 | -0.081 | 58.0 | 0.0 | 0.0 | noncon | |
5'...UGAUCUGCCCGCCU
CAGCCUC
C...
3' CUUAAGUAGUGCCG GUCGGAG A |
7mer-m8 | 941-947 | -0.03 | 33.0 | 0.0 | 0.0 | noncon |