GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 

Pathway Map

GANAB



General Information
Gene Symbol:   
GANAB
Protein name:   
Neutral alpha-glucosidase AB
Enzyme Class:   
Glycosidase
CAZy Family:   
E.C. No:   
Organs:   
Reaction (SNFG):   
GANAB GANAB Man(a1-2) GANAB GANAB Glc(a1-3)Man(a1-2)
H2O +
+
H2O +
+
Reaction (IUBMB):   
No specified reaction.

About

• This functions as a heterodimeric enzyme complex GANAB (active part)/PRKCHS (inactive part) to provide a-glucosidase II activity.
• This removes the second and third α(1-3)Glc from Glc2Man9GlcNAc2-Asn during N-glycosylation processing to produce Man9GlcNAc2-Asn.
• In addition to N-glycan processing, α-Glucosidase II is also involved in protein folding quality control in the ER.
• Glycoproteins containing a single α(1-3)Glc residue is recognized by the ER lectin chaperones, calreticulin (CRT) and calnexin (CNX), that are complexed with protein disulfide isomerase isoforms and aid in folding and maturation of glycoproteins.
• Upon transient release from the lectin chaperones, α-Glucosidase II clips the remaining Glc and the protein moves to the next steps of processing provided it is well folded.
• If the glycoprotein is incompletely folded, the misfolded protein is recognized in the context of its N-glycan by the folding sensor UGGT. UGGT puts back one α(1-3)Glc that is removed by GANAB, and refolding is again attempted by CNX/CRT.
• This enzyme activity is inhibited by 1-deoxynojirimycin, N-5-carboxypentyl-dNM, and castanospermine.
• Mutations in PRKCSH were detected in patients with autosomal dominant polycystic liver disease (ADPLD).


Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA aRefSeq:   
Protein RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     N-linked
Compartment:  
     ER, Cis, Medial, Trans, TGN
Substrate:  
     Glc(a1-3)Man(a1-2) or Glc(a1-3)Glc(a1-3)Man(a1-2)
Product:  
     Man(a1-2) or Glc(a1-3)Man(a1-2)

Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:       (pmol/cell • hr)       KM:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 100 80 60 40 20 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 700 600 500 400 300 200 100 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data

miRNA-GlycoEnzyme Interactome {ref. 9}
GANAB/hsa-miR-6777-5p
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'... UCUACCCUUUUCCU CUCCCCGA ...
3'   AGGUGGUGACGGACU GAGGGGC A
8mer 596-603 -0.66 99.0 -0.6 98.0 noncon