Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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|
+ | Ser | → |
|
+ | UDP |
|
+ | Thr | → |
|
+ | UDP |
ER | Cis- | Medial- | Trans- | TGN |
---|---|---|---|---|
|
|
|
|
|
GALNT10/hsa-miR-4731-5p |
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miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...UCCACCCUCUGAAC
CCCCAGCA
...
3' GUGUGAGUACACCG GGGGUCG U |
8mer | 2401-2408 | -0.272 | 95.0 | -0.269 | 96.0 | noncon | |
5'...GUUUCUGCUCACAU
CCCCAGC
U...
3' GUGUGAGUACACCG GGGGUCG U |
7mer-m8 | 2827-2833 | -0.233 | 93.0 | -0.23 | 94.0 | noncon | |
5'...AGGCACAAGGACAG
CCCAGCA
C...
3' GUGUGAGUACACCGG GGGUCG U |
7mer-A1 | 761-767 | -0.142 | 82.0 | -0.142 | 86.0 | noncon | |
5'...ACAGUCAAGGCAGC
CCCCAGC
C...
3' GUGUGAGUACACCG GGGGUCG U |
7mer-m8 | 1166-1172 | -0.123 | 78.0 | -0.123 | 84.0 | noncon | |
5'...ACUUCCACUUCUGG
CCCAGCA
C...
3' GUGUGAGUACACCGG GGGUCG U |
7mer-A1 | 1764-1770 | -0.109 | 75.0 | -0.108 | 82.0 | noncon |