Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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+ |
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→ |
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+ | UDP |
ER | Cis- | Medial- | Trans- | TGN |
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ALG10B/hsa-miR-1827 |
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miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...CCGUCAUAUU
CUGCCUCA
...
3' UAAGUUAGAU GACGGAG U |
8mer | 6410-6417 | -0.366 | 98.0 | -0.327 | 97.0 | noncon | |
5'...CUCAAAACAC
CUGCCUCA
...
3' UAAGUUAGAU GACGGAG U |
8mer | 5974-5981 | -0.235 | 91.0 | -0.211 | 92.0 | noncon | |
5'...ACUCCAGUCU
CUGCCUC
U...
3' UAAGUUAGAU GACGGAG U |
7mer-m8 | 993-999 | -0.182 | 84.0 | -0.182 | 89.0 | noncon | |
5'...AGCAGUUCUC
CUGCCUCA
...
3' UAAGUUAGAU GACGGAG U |
8mer | 2930-2937 | -0.128 | 73.0 | -0.125 | 82.0 | noncon | |
5'...GGUAAUCCAC
CUGCCUC
G...
3' UAAGUUAGAU GACGGAG U |
7mer-m8 | 3066-3072 | -0.096 | 63.0 | -0.094 | 76.0 | noncon |