GlycoEnzDB
The Comprehensive Glyco-enzyme Database
GlycoEnzDB
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B3GALT5



General Information
Gene Symbol:   
B3GALT5
Protein name:   
Beta-1,3-galactosyltransferase 5
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
E.C. No:   
Reaction (SNFG):   
+
+ UDP
+
+ UDP
Reaction (IUBMB):   
No specified reaction.

About

* Produces type 1 chain linkage in glycolipids and core-3 O-glycans, but not N-linked glycoproteins.
* May be an important enzyme forming CA19-9 in colon cancer. Beyond serving as a biomarker, CA19-9 also promotes pancreatitis and pancreatic cancer (in mice).
* B3GalT5 efficiently transfers Gal to the GlcNAc of the glycolipid Lc3Cer and to the terminal GalNAc residue of the globoside Gb4.
* It may thus contribute to the formation of CA 19-9, SSEA-3 and elongated core-3 O-glycans.
* Expression is restricted to the colorectum, small intestine, stomach, and pancreas.


Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA_RefSeq:   
Protein_RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     O_linked (mucin type), GSL
Compartment:  
     Cis, Medial, Trans, TGN
Substrate:  
     GlcNAc(b1-?) or GalNAc(b1-?)
Product:  
     Gal(b1-3)GlcNAc(b1-?) or Gal(b1-3)GalNAc(b1-?)
Constraints:  
     !Gal(b1-4)@GlcNAc(b1-?)&!GalNAc(b1-4)@GlcNAc(b1-?)

Simulation Parameters
Mechaelis-Menten parameters (suggested)
Vm:       (pmol/cell • hr)       Km:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 8 6 4 2 0 RPKM
Expression data are collected from NCBI gene database

Cancer Cell Line Encyclopedia {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 10 8 6 4 2 0 Transcripts per million (TPM)

Transcription factor {ref. 10}
No high degree of confidence data
miRNA-GlycoEnzyme Interactome {ref. 9}
B3GALT5/hsa-miR-6769b-3p
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'...ACACUGUGUGAAA AGAGAGGA ...
3'   GAUACCCACCCUG UCUCUCC C
8mer 5281-5288 -0.335 97.0 -0.335 98.0 noncon
5'...AUGUGGGUUAAAU GAGAGGA U...
3'   GAUACCCACCCUGU CUCUCC C
7mer-A1 7391-7397 -0.236 94.0 -0.236 96.0 noncon
5'...ACCGCAGGCACCC AGAGAGGA ...
3'   GAUACCCACCCUG UCUCUCC C
8mer 2492-2499 -0.085 73.0 -0.085 81.0 noncon
5'...CUGAGGCAGAGAG AGAGAGG G...
3'   GAUACCCACCCUG UCUCUCC C
7mer-m8 2632-2638 -0.062 67.0 -0.062 77.0 noncon
5'...GACCCCAAGUACC AGAGAGG U...
3'   GAUACCCACCCUG UCUCUCC C
7mer-m8 6709-6715 -0.02 38.0 -0.02 57.0 noncon