GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 
Pathway Map
UXS1



General Information
Gene Symbol:   
UXS1
Protein name:   
UDP-glucuronic acid decarboxylase 1
Enzyme Class:   
CAZy Family:   
E.C. No:   
4.1.1.35
Organs:   
Reaction (SNFG):   

UDP-GlcA → UDP-Xyl
Reaction (IUBMB):   
No specified reaction.
About

• UDP-Xylose synthase creates UDP-Xylose from UDP-glucuronic acid.
• Important for the synthesis of dystroglycan, O-linked glucose related glycans, and Glycosaminoglycans.

Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
No Record 
Reactome:   
No Record
Related Database
Organism:   
Homo sapiens
Uniprot:   
Q8NBZ7 
NCBI GeneID:   
80146
GlyMap GeneID:   
80146
DNA aRefSeq:   
NM_001253875.1 
Protein RefSeq:   
NP_001240804.1 
BRENDA:   
Kinetic info.
OMIM number:   
609749
GeneCards database:   
UXS1
Enzyme Specificity
Glycan Type:  
     GAG
Compartment:  
     Cis, Medial, Trans, TGN
Substrate:  
     UDP-GlcA
Product:  
     UDP-Xyl
Constraints:  
     None
Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:       (pmol/cell • hr)       KM:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN










Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 30 20 10 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 500 400 300 200 100 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
Transcriptional start site (TSS) 0 200 -2000 -1800 -1600 -1400 -1200 -1000 -800 -600 -400 -200
ENST00000409032 ENST00000409501 ENST00000473338 NFE2 CLOCK MAZ STAT5B USF2 SIX5 MYOD1 BATF E2F6 ZBTB33 ZBTB33 KLF1 ZBTB2 YY1 TEAD4 ZNF263 PPARG NFE2 MYC CRY1 RUNX1 MYCN
miRNA-GlycoEnzyme Interactome {ref. 9}
UXS1/hsa-miR-93-5p
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'... GCAGAUUUUGCCUU GCACUUU U...
3'   GAUGGACGUGCUUGU CGUGAAA C
 7mer-m8 193-199 -0.319 98.0 -0.319 99.0 con