Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
---|
|
+ | R | → |
|
+ | null |
ER | Cis- | Medial- | Trans- | TGN |
---|---|---|---|---|
|
|
|
|
|
UGT2A1/hsa-miR-5011-5p |
---|
miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...GAAAAAGAGGAAA
UAUAUAUA
...
3' CUCACGUACCGAC AUAUAUA U |
8mer | 19-26 | -0.285 | 98.0 | -0.285 | 99.0 | noncon | |
5'...GAAAAAGAGGAAA
UAUAUAUA
...
3' CUCACGUACCGAC AUAUAUA U |
8mer | 19-26 | -0.17 | 96.0 | -0.17 | 97.0 | noncon | |
5'...AAAAGAGGAAAUA
UAUAUAU
U...
3' CUCACGUACCGAC AUAUAUA U |
7mer-m8 | 21-27 | -0.162 | 95.0 | -0.162 | 97.0 | noncon | |
5'...ACUAAUGUUCAUA
AUAUAUA
A...
3' CUCACGUACCGACA UAUAUA U |
7mer-A1 | 883-889 | -0.123 | 93.0 | -0.123 | 95.0 | noncon | |
5'...ACUAAUGUUCAUA
AUAUAUA
A...
3' CUCACGUACCGACA UAUAUA U |
7mer-A1 | 883-889 | -0.115 | 92.0 | 0.0 | 27.0 | noncon | |
5'...AAAAGAGGAAAUA
UAUAUAU
U...
3' CUCACGUACCGAC AUAUAUA U |
7mer-m8 | 21-27 | -0.103 | 91.0 | -0.103 | 94.0 | noncon | |
5'...AGAAAAAGAGGAA
AUAUAUA
U...
3' CUCACGUACCGACA UAUAUA U |
7mer-A1 | 18-24 | -0.107 | 91.0 | -0.107 | 94.0 | noncon | |
5'...AGAAAAAGAGGAA
AUAUAUA
U...
3' CUCACGUACCGACA UAUAUA U |
7mer-A1 | 18-24 | -0.078 | 87.0 | -0.078 | 91.0 | noncon |