GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 

Glycogene class
A4GNT
ABO
ALG1
ALG10
ALG10B
ALG11
ALG12
ALG13
ALG14
ALG1L
ALG1L2
ALG2
ALG3
ALG5
ALG6
ALG8
ALG9
B3GALNT2
B3GALT1
B3GALT2
B3GALT5
B3GAT1
B3GAT2
B3GNT2
B3GNT3
B3GNT4
B3GNT6
B3GNT7
B3GNT8
B4GALNT2
B4GALNT3
B4GALNT4
B4GALT1
B4GALT2
B4GALT3
B4GALT4
B4GALT5
C1GALT1
C1GALT1C1
CHST1
CHST10
CHST2
CHST3
CHST4
CHST5
CHST8
CHST9
CMAS
CTBS
DAD1
DDOST
DPAGT1
DPM1
DPM2
DPM3
EDEM1
EDEM2
EDEM3
ENGASE
FPGT
FUCA1
FUT1
FUT10
FUT11
FUT2
FUT3
FUT4
FUT5
FUT6
FUT7
FUT8
FUT9
GAL3ST2
GAL3ST3
GAL3ST4
GALNT1
GALNT10
GALNT11
GALNT12
GALNT13
GALNT14
GALNT15
GALNT16
GALNT17
GALNT18
GALNT2
GALNT3
GALNT4
GALNT5
GALNT6
GALNT7
GALNT8
GALNT9
GALNTL6
GANAB
GCNT1
GCNT2
GCNT3
GCNT4
GNPNAT1
GNPTAB
GNPTG
MAN1A1
MAN1A2
MAN1B1
MAN1C1
MAN2A1
MAN2A2
MAN2B1
MAN2B2
MAN2C1
MANBA
MANEA
MGAT1
MGAT2
MGAT3
MGAT4A
MGAT4B
MGAT4C
MGAT4D
MGAT5
MOGS
NAGK
NAGPA
NEU1
NEU2
NEU3
NEU4
PRKCSH
RPN1
RPN2
ST3GAL1
ST3GAL2
ST3GAL3
ST3GAL4
ST3GAL6
ST6GAL1
ST6GAL2
ST6GALNAC1
ST6GALNAC2
ST6GALNAC3
ST6GALNAC4
ST8SIA2
ST8SIA3
ST8SIA4
ST8SIA6
STT3A
STT3B
UGGT1
UGGT2
Pathway Map

ST8SIA2



General Information
Gene Symbol:   
ST8SIA2
Protein name:   
Alpha-2,8-sialyltransferase 8B
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
E.C. No:   
Organs:   
Reaction (SNFG):   
+
+ CMP
Reaction (IUBMB):   
No specified reaction.

About

• ST8SIA2 is characterized by the ability to synthesize polysialic acid (polySia) structures and can therefore be sub-classified as a polysialyltransferase. Sia polymers can have upto 400 Sia units.
• ST8SIA2 transfers Sia residue from CMP-Sia to Siaα2,3Gal- and Siaα2,6Gal/GalNAc on N-linked and/or O-linked glycans.
• Its function is similar to another polySia enzyme ST8Sia-4, though both proteins are expressed in different spatiotemporal patterns.
• Restricted activity has been shown mostly to brain proteins especially NCAM and SynCAM-1 in the IgG domain, though it can also act on other proteins with lower activity. Thus, there is a protein dependence for enzyme activity.
• PolySia imparts an anti-adhesive effect due to the bulky, polyanionic structure.
• It is implicated in psychiatric disorders and cancer.
• Endo-N-acylneuraminidase (Endo-N) specifically cleaves α2,8-linked polySia.
• ST8Sia-2 plus -4 DKO mice show severe phenotypes, such as postnatal growth retardation, precocious death, a high incidence of hydrocephalus, and agenesis or hypoplasia of major brain fiber tracts.
• While poly-Sia is not common to normal tissue, a number of cancers express polySia including neuroblastomas, Wilms tumors, medulloblastomas, pheochromocytomas, medullary thyroid carcinomas, non-small-cell lung carcinomas (NSCL), pituitary adenomas and breast cancer.


Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA aRefSeq:   
Protein RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     N-linked, O-linked (mucin type)
Compartment:  
     
Substrate:  
     NeuAc(a2-?)
Product:  
     NeuAc(a2-8)NeuAc(a2-?)

Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:       (pmol/cell • hr)       KM:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 4 2 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 30 20 10 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data

miRNA-GlycoEnzyme Interactome {ref. 9}
ST8SIA2/hsa-miR-605-3p
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'...AGCAACCUCACACC UGCCUUCA ...
3'   AGAUUUAGAGUAUC ACGGAAG A
8mer 3404-3411 -0.264 93.0 -0.264 95.0 noncon
5'...AACCACUCUCUGUU UGCCUUC U...
3'   AGAUUUAGAGUAUC ACGGAAG A
7mer-m8 1134-1140 -0.222 88.0 -0.222 92.0 noncon
5'...GAGUCCUUCCACCC UGCCUUCA ...
3'   AGAUUUAGAGUAUC ACGGAAG A
8mer 2295-2302 -0.142 73.0 -0.142 82.0 noncon