Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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Glc(6P) | → | Fruc(6P) |
• Glucose-6-phosphate isomerase converts glucose-6-phosphate into fructose-6-phosphate.
• Second step in glycolysis pathway.
ER | Cis- | Medial- | Trans- | TGN |
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GPI/hsa-miR-6884-5p |
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miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...CUCGUGCUCAUCUG
CAGCCUC
C...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 16-22 | -0.255 | 94.0 | -0.226 | 94.0 | noncon | |
5'...GGAGGUUGUAGGCU
CAGCCUC
U...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 304-310 | -0.211 | 90.0 | -0.004 | 31.0 | noncon | |
5'...AGGAGCAUUCACUU
CAGCCUC
U...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 2207-2213 | -0.211 | 90.0 | 0.0 | 0.0 | noncon | |
5'...UCAUAGCUGACUGA
AGCCUCA
A...
3' GUUGUAGUGGAAGAG UCGGAG A |
7mer-A1 | 1682-1688 | -0.153 | 79.0 | 0.0 | 14.0 | noncon | |
5'...GAGAUCUCCCACCU
CAGCCUC
C...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 1554-1560 | -0.151 | 78.0 | 0.0 | 14.0 | noncon | |
5'...AGGGCACUUGCUUG
AGCCUCA
U...
3' GUUGUAGUGGAAGAG UCGGAG A |
7mer-A1 | 2317-2323 | -0.143 | 76.0 | 0.0 | 0.0 | noncon | |
5'...UAAUCCUCUUGCCU
CAGCCUC
C...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 1109-1115 | -0.115 | 68.0 | 0.0 | 14.0 | noncon | |
5'...CCAUUCUCCUGCCU
CAGCCUC
C...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 1890-1896 | -0.099 | 62.0 | 0.0 | 14.0 | noncon | |
5'...CUAUUCUCCUGCCU
CAGCCUC
C...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 805-811 | -0.092 | 59.0 | 0.0 | 14.0 | noncon | |
5'...UGAUCCGCCCGCCU
CAGCCUC
C...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 1436-1442 | -0.081 | 56.0 | 0.0 | 0.0 | noncon | |
5'...UGAUCUGCCCGCCU
CAGCCUC
C...
3' GUUGUAGUGGAAGA GUCGGAG A |
7mer-m8 | 941-947 | -0.03 | 32.0 | 0.0 | 0.0 | noncon |