Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Glycogene class |
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Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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GlcN(6P) | → | GlcNAc(6P) |
• Converts glucosamine 6 phosphate to N-acetylglucosamine 6 phosphate in the hexosamine biosynthesis pathway.
ER | Cis- | Medial- | Trans- | TGN |
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GNPNAT1/hsa-miR-7106-5p |
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miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...AUAUCUCUUAAA
UCCUCCCA
...
3' GGGUUCUAGGGG AGGAGGG U |
8mer | 1886-1893 | -0.354 | 98.0 | -0.182 | 93.0 | noncon | |
5'...AGGCUCAAGUGA
UCCUCCCA
...
3' GGGUUCUAGGGG AGGAGGG U |
8mer | 2356-2363 | -0.198 | 92.0 | -0.105 | 83.0 | noncon | |
5'...CUUCCACCUCAG
CCUCCCA
U...
3' GGGUUCUAGGGGA GGAGGG U |
7mer-A1 | 2241-2247 | -0.089 | 71.0 | -0.048 | 67.0 | noncon | |
5'...CUCCCACCUCAG
CCUCCCA
A...
3' GGGUUCUAGGGGA GGAGGG U |
7mer-A1 | 2370-2376 | -0.079 | 67.0 | -0.043 | 65.0 | noncon |