GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 
Pathway Map
B4GALT7



General Information
Gene Symbol:   
B4GALT7
Protein name:   
Beta-1,4-galactosyltransferase 7
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
GT7
E.C. No:   
2.4.1.133
Organs:   
Reaction (SNFG):   
+
→
+ UDP
Reaction (IUBMB):   
No specified reaction.
About

• β4GalT7 transfers galactose from UDP-Gal to Xylβ1-Ser and is involved in the biosynthesis of the linkage between core proteins and glycosaminoglycans.

Related Pathway
KEGG ORTHOLOGY:   
K00733
KEGG Pathway:   
ko00532  ko00534  ko01100 
Reactome:   
R-HSA-1971475
Related Database
Organism:   
Homo sapiens
Uniprot:   
Q9UBV7 
NCBI GeneID:   
11285
GlyMap GeneID:   
11285
DNA aRefSeq:   
NM_007255.2 
Protein RefSeq:   
NP_009186.1 
BRENDA:   
Kinetic info.
OMIM number:   
604327
GeneCards database:   
B4GALT7
Enzyme Specificity
Glycan Type:  
     GAG
Compartment:  
     Cis, Medial, Trans, TGN
Substrate:  
     Xyl(b1-?)Ser
Product:  
     Gal(b1-4)Xyl(b1-?)Ser
Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:    5.75e-04    (pmol/cell • hr)       KM:    1.50e+08    (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN










Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 6 4 2 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 80 60 40 20 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data
miRNA-GlycoEnzyme Interactome {ref. 9}
B4GALT7/hsa-miR-214-5p
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'...GAAGGCAAAGCACA GACAGGCA ...
3'   CGUGUCGUUCACAU CUGUCCG U
 8mer 2302-2309 -0.285 96.0 -0.019 69.0 noncon
5'...UAUUGUGAUGGGCA GACAGGC C...
3'   CGUGUCGUUCACAU CUGUCCG U
 7mer-m8 1542-1548 -0.066 76.0 -0.005 50.0 noncon
5'...GAGUAUAUGGGACU ACAGGCA U...
3'   CGUGUCGUUCACAUC UGUCCG U
 7mer-A1 4257-4263 -0.029 62.0 -0.002 45.0 noncon
5'...GAGUAGCUGGGAUU ACAGGCA U...
3'   CGUGUCGUUCACAUC UGUCCG U
 7mer-A1 3083-3089 -0.01 32.0 -0.001 39.0 noncon