GlyClass

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 

Pathway Map

B4GALT1



General Information
Gene Symbol:   
B4GALT1
Protein name:   
Beta-1,4-galactosyltransferase 1
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
GT7
E.C. No:   
Organs:   
Reaction (SNFG):   
+
+ UDP
+
+ UDP
Reaction (IUBMB):   
No specified reaction.

About

• Creates LacNAc (Galβ1-4GlcNAc) the most prevelant carbohydrate epitope in mammals and also Galβ1-4Glc (lactose) in milk.
• Galβ1-4GlcNAc linkage (type 2) is widely distributed on glycolipids and glycoproteins derived from the ectoderm and mesoderm.
• B4GalT1 activity on Glc is low, but it interacts with α-lactalbumin, lowering the KM for glucose activity by 1,000-fold. α-lactalbumin levels are high at the start and end of pregnancy.
• LacNAc structures are more prevalant in vertebrates but LacdiNAc is common in invertebrates. Additionally a single base mutation Ile/Lue to Tyr in B4GalNAc-T converts it to B4GalT1. Thus, it maybe that this enzyme evolved from an invertebrated B4GalNAcT.
• B4GalT1-deficient mice exhibit moderately decreased galactosylation and an increased expression of more branched N-glycans. The is a shift in these animals from type 2 chain (Galβ1-4GlcNAc) to type 1 chain (Galβ1-3GlcNAc) chains on the lactosamine backbone. Galactosylation of the N-glycans in the serum IgA from the B4GalT1-deficient mice was completely absent, and they spontaneously developed human immunoglobulin A nephropathy.


Related Pathway
KEGG ORTHOLOGY:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA aRefSeq:   
Protein RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     N-linked, O-linked (mucin type), O-linked (other), GSL
Compartment:  
     Cis, Medial, Trans, TGN
Substrate:  
     GlcNAc(b1-?) or Glc(b1-?)
Product:  
     Gal(b1-4)GlcNAc(b1-?) or Gal(b1-4)Glc(b1-?)
Constraints:  
     !Gal(b1-3)GlcNAc(b1-?)&!@GlcNAc(b1-4)...Man(b1-4)

Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:    5.75e-04    (pmol/cell • hr)       KM:    1.50e+08    (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 60 50 40 30 20 10 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 220 200 180 160 140 120 100 80 60 40 20 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data

miRNA-GlycoEnzyme Interactome {ref. 9}
B4GALT1/hsa-miR-4524b-5p
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'...AAAUUCGGAGAGU GCUGCUAA ...
3'   CUCUGUCCGAAUA CGACGAU A
8mer 394-401 -0.364 96.0 -0.36 97.0 noncon