Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Glycogene class |
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Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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|
+ |
|
→ |
|
+ | UDP |
• Involved in the biosynthesis of the HNK-1 epitope.
• Can also play a role in glycosaminoglycan biosynthesis.
ER | Cis- | Medial- | Trans- | TGN |
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B3GAT1/hsa-miR-6778-5p |
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miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...UCCCUGGCUCCCUG
UCCCUGGG
...
3' UGGACGGAGGACAG GAGGGUG A |
8mer | 1602-1609 | -0.384 | 97.0 | -0.384 | 98.0 | noncon | |
5'...UGGUGCUCCAGCGC
ACCUCCC
C...
3' UGGACGGAGGACAGG AGGGUG A |
6mer | 1461-1467 | -0.126 | 61.0 | -0.126 | 75.0 | noncon |